FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index13_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 21035017 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCTGG | 4406155 | 2.5711532 | 5.856307 | 1 |
| GAAGA | 4468350 | 2.525295 | 5.258641 | 2 |
| CTTCT | 4526790 | 2.5145352 | 5.2423515 | 1 |
| AAGAA | 4503035 | 2.4927268 | 5.224858 | 2 |
| CTGGA | 4209270 | 2.4125195 | 8.377246 | 1 |
| TCCAG | 4077375 | 2.3305223 | 5.020314 | 2 |
| CTCCT | 4060890 | 2.305672 | 6.4062543 | 1 |
| CTGGG | 3809985 | 2.2293735 | 7.8490577 | 1 |
| CAGGA | 3846975 | 2.2135446 | 5.553557 | 1 |
| CTTCA | 3926700 | 2.1897771 | 5.4343824 | 1 |
| CTCCA | 3779350 | 2.1542609 | 6.949935 | 1 |
| CCCAG | 3667455 | 2.1426258 | 6.6007094 | 1 |
| CAGAA | 3661975 | 2.0639007 | 5.0560074 | 1 |
| CTCTG | 3528500 | 2.0088978 | 5.9113903 | 1 |
| CTGGC | 3244090 | 1.8930454 | 5.050929 | 1 |
| TGGAA | 3272315 | 1.842108 | 5.16688 | 2 |
| CTGAA | 3253595 | 1.8265518 | 5.2157855 | 1 |
| CTCAG | 3023255 | 1.7280145 | 5.918356 | 1 |
| CTTGG | 2856615 | 1.6308382 | 5.265389 | 1 |